PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G045100.1
Common NameB456_013G045100, LOC105784519
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 267aa    MW: 29433.1 Da    PI: 7.1335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G045100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-1259106455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er RR+++++ f++L  llP++    s+K +K++i+ +Av++I+ L+
  Gorai.013G045100.1  59 MHIWTERERRKKMRNMFSNLHALLPHL----SPKADKSTIVDEAVKHIQTLE 106
                         56678*********************9....9*****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1454116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.14155105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1458116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-1158110No hitNo description
PfamPF000106.3E-1060106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-763111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.65E-4189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSATPGSFFL CENHPFPPPS NNNSGGGGAN GSEDNNQHEK QPLQDSTNNK RGGESDHEMH  60
IWTERERRKK MRNMFSNLHA LLPHLSPKAD KSTIVDEAVK HIQTLEKTLQ KLQKQKLDRL  120
QEGPNPIDLG HQDTSREAFM ADQVLSGNDA AAKDLIIKSN SVTVAQPRLQ FQTWTSSNVV  180
LNICGKEAQI SVCSPKKPGL FTSVCCILEK HYLEVISAHV SSQSNRSIFM IQAHQVGSSG  240
AYNHQVSEVD EIFKQAAAEI MFCLTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5903531e-133JX590353.1 Gossypium hirsutum clone NBRI_GE25251 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465876.10.0PREDICTED: transcription factor bHLH95-like isoform X1
TrEMBLA0A0D2VAJ00.0A0A0D2VAJ0_G
STRINGVIT_03s0063g00170.t012e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]